Tomato growth in production-like setting

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Oliveira, Monique Pires Gravina de; Amaro, Rafaella Pironato; Pescarini, Henrique Baeninger; Rodrigues, Luiz Henrique Antunes, 2021, "Tomato growth in production-like setting", https://doi.org/10.25824/redu/EP4NGO, Repositório de Dados de Pesquisa da Unicamp, V5, UNF:6:eDxBhF7HIrGl1iIeeqApvA== [fileUNF]

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Description	This dataset contains observations of tomato growth in a production-like setting. Observations include environmental data and plant growth data. Environmental data refers to air temperature, humidity and photosynthetically active radiation / luminosity from two different types of sensors. Growth data refers to destructive analysis for fresh mass, dry mass and leaf area index, and to non-destructive monitoring using pictures, including pixel-level (segmentation) annotations of leaves and fruits, and total fresh weight of plant and wet substrate.
Subject	Agricultural Sciences
Keyword	Tomato, Computer vision, Greenhouse, Crop modeling
Related Publication	Oliveira, M., Amaro, R., Pescarini, H., & Rodrigues, L. H. (2024). Tomato plants’ growth observations obtained from multiple sources in a production-like setting. In SciELO Preprints. https://doi.org/10.1590/SciELOPreprints.7667 doi: 10.1590/SciELOPreprints.7667
License/Data Use Agreement	CC BY-NC 4.0

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	1 to 10 of 17 Files	Original Format Archival Format (.tab)
	LAI data - Cycle 03 - File 01 of 02 Unknown - 2.2 GB Published Dec 10, 2021 193 Downloads MD5: 224d2decd18836ebfac84f45e45690cd Leaf scans from Cycle 03. File 01/02. Plant identification is included in filename. Size reference in each file is a pink post-it (Length: 5 cm; Area: 19 cm2). \| Rename file extension from .zipfile to .zip to unzip the .png files. Datadestructive_samplesgrowthlai	Access File ???file.accessBtn.header.access??? Public Download Options Original File Format ???file.accessBtn.header.metadata??? Data File Citation EndNote XML RIS BibTeX
	destructive_cycle01.tab Tabular Data - 17.4 KB Published Dec 9, 2021 106 Downloads 13 Variables, 999 Observations UNF:6:i0iYpgmrQ+el/FRw788v1Q== Data (mass, sampling dates) from destructive analyses corresponding to the first growth cycle. Original format is .xlsx and data is separated in different tabs. Datadestructive_samplesgrowth	Access File ???file.accessBtn.header.access??? Public Download Options MS Excel Spreadsheet (Original File Format) Tab-Delimited RData ???file.accessBtn.header.metadata??? Variable Metadata Data File Citation EndNote XML RIS BibTeX
	destructive_cycle02.tab Tabular Data - 1.1 KB Published Dec 9, 2021 84 Downloads 14 Variables, 24 Observations UNF:6:/P8JYDN6d4UTAnVtXlhEyg== Data (mass, sampling dates, node number) from destructive analyses corresponding to the second growth cycle. Original format is .xlsx and data is separated in different tabs. Datadestructive_samplesgrowth	Access File ???file.accessBtn.header.access??? Public Download Options MS Excel Spreadsheet (Original File Format) Tab-Delimited RData ???file.accessBtn.header.metadata??? Variable Metadata Data File Citation EndNote XML RIS BibTeX
	destructive_cycle03.tab Tabular Data - 1.4 KB Published Dec 9, 2021 87 Downloads 16 Variables, 36 Observations UNF:6:mkqFXLIn+2bwEbGsQj2elA== Data (mass, sampling dates, heights, node number) from destructive analyses corresponding to the third growth cycle. Original format is .xlsx and data is separated in different tabs. Datadestructive_samplesgrowth	Access File ???file.accessBtn.header.access??? Public Download Options MS Excel Spreadsheet (Original File Format) Tab-Delimited RData ???file.accessBtn.header.metadata??? Variable Metadata Data File Citation EndNote XML RIS BibTeX
	LAI data - Cycle 01 Unknown - 1.5 GB Published Dec 10, 2021 158 Downloads MD5: a5cd0f7a73ffb9a60e2a87e0848b65c8 Leaf scans from Cycle 01. Plant identification is included in filename. Size reference in each file is a black (Length: 5.7 cm; Area: 50.73 cm2). \| Rename file extension from .zipfile to .zip to unzip the .png files. Datadestructive_samplesgrowthlai	Access File ???file.accessBtn.header.access??? Public Download Options Original File Format ???file.accessBtn.header.metadata??? Data File Citation EndNote XML RIS BibTeX
	LAI data - Cycle 02 - File 01 of 03 Unknown - 3.2 GB Published Dec 13, 2021 145 Downloads MD5: 3938a06fc6a61c6a37a278cc95aa4471 Leaf scans from Cycle 02. File 01/03. Plant identification is included in filename. Size reference in each file is a pink post-it (Length: 5 cm; Area: 19 cm2). \| Rename file extension from .zipfile to .zip to unzip the .png files. Datadestructive_samplesgrowthlai	Access File ???file.accessBtn.header.access??? Public Download Options Original File Format ???file.accessBtn.header.metadata??? Data File Citation EndNote XML RIS BibTeX
	LAI data - Cycle 02 - File 02 of 03 Unknown - 1.5 GB Published Dec 13, 2021 102 Downloads MD5: 9ad2323b44b245dd3112fc211feb3adf Leaf scans from Cycle 02. File 02/03. Plant identification is included in filename. Size reference in each file is a pink post-it (Length: 5 cm; Area: 19 cm2). \| Rename file extension from .zipfile to .zip to unzip the .png files. Datadestructive_samplesgrowthlai	Access File ???file.accessBtn.header.access??? Public Download Options Original File Format ???file.accessBtn.header.metadata??? Data File Citation EndNote XML RIS BibTeX
	LAI data - Cycle 02 - File 03 of 03 Unknown - 2.1 GB Published Dec 13, 2021 108 Downloads MD5: b29331973be54560a56124d80298b20f Leaf scans from Cycle 02. File 03/03. Plant identification is included in filename. Size reference in each file is a pink post-it (Length: 5 cm; Area: 19 cm2). \| Rename file extension from .zipfile to .zip to unzip the .png files. Datadestructive_samplesgrowthlai	Access File ???file.accessBtn.header.access??? Public Download Options Original File Format ???file.accessBtn.header.metadata??? Data File Citation EndNote XML RIS BibTeX
	LAI data - Cycle 03 - File 02 of 02 Unknown - 2.5 GB Published Dec 10, 2021 151 Downloads MD5: 43c66ed0333038ce4f97fd83f9ff1171 Leaf scans from Cycle 03. File 02/02. Plant identification is included in filename. Size reference in each file is a pink post-it (Length: 5 cm; Area: 19 cm2). \| Rename file extension from .zipfile to .zip to unzip the .png files. Datadestructive_samplesgrowthlai	Access File ???file.accessBtn.header.access??? Public Download Options Original File Format ???file.accessBtn.header.metadata??? Data File Citation EndNote XML RIS BibTeX
	PAR Unknown - 834.7 KB Published Dec 9, 2021 88 Downloads MD5: 41e063ba55f0e5ae79aab1ad9df28f7b Photosynthetically active radiation obtained by quantum sensors Licor LI-190SA with a datalogger Licor LI-1400, using range from 400 to 700 nm. \| Rename file extension from .zipfile to .zip to unzip the .txt files. Dataenvironmentpar	Access File ???file.accessBtn.header.access??? Public Download Options Original File Format ???file.accessBtn.header.metadata??? Data File Citation EndNote XML RIS BibTeX

Citation Metadata

Persistent Identifier	doi:10.25824/redu/EP4NGO
Publication Date	2021-12-09
Title	Tomato growth in production-like setting
Alternative URL	https://zenodo.org/doi/10.5281/zenodo.7632419
Author	Oliveira, Monique Pires Gravina de (Universidade Estadual de Campinas (UNICAMP). Faculdade de Engenharia Agrícola) - ORCID: https://orcid.org/0000-0001-7167-4473 Amaro, Rafaella Pironato (Universidade Estadual de Campinas (UNICAMP). Faculdade de Engenharia Agrícola) - ORCID: https://orcid.org/0000-0002-2186-0857 Pescarini, Henrique Baeninger (Universidade Estadual de Campinas (UNICAMP). Faculdade de Engenharia Agrícola) - ORCID: https://orcid.org/0000-0002-9044-8831 Rodrigues, Luiz Henrique Antunes (Universidade Estadual de Campinas (UNICAMP). Faculdade de Engenharia Agrícola) - ORCID: https://orcid.org/0000-0002-1756-7367
Point of Contact	Use email button above to contact. Rodrigues, Luiz Henrique Antunes (Universidade Estadual de Campinas (UNICAMP). Faculdade de Engenharia Agrícola)
Description	This dataset contains observations of tomato growth in a production-like setting. Observations include environmental data and plant growth data. Environmental data refers to air temperature, humidity and photosynthetically active radiation / luminosity from two different types of sensors. Growth data refers to destructive analysis for fresh mass, dry mass and leaf area index, and to non-destructive monitoring using pictures, including pixel-level (segmentation) annotations of leaves and fruits, and total fresh weight of plant and wet substrate.
Subject	Agricultural Sciences
Keyword	Tomato Computer vision Greenhouse Crop modeling
Related Publication	Oliveira, M., Amaro, R., Pescarini, H., & Rodrigues, L. H. (2024). Tomato plants’ growth observations obtained from multiple sources in a production-like setting. In SciELO Preprints. https://doi.org/10.1590/SciELOPreprints.7667 doi: 10.1590/SciELOPreprints.7667 https://doi.org/10.1590/SciELOPreprints.7667 OLIVEIRA, Monique Pires Gravina de. Leveraging data assimilation and monitoring data for improvement of crop growth estimates in protected environments: Assimilação de dados de monitoramento em tempo real visando melhores estimativas do crescimento vegetal em cultivo protegido. 2022. 1 recurso online (204 p.) Tese (doutorado) - Universidade Estadual de Campinas, Faculdade de Engenharia Agrícola, Campinas, SP. url: https://hdl.handle.net/20.500.12733/4792 Oliveira, M. P. G. de, Zorzeto-Cesar, T. Q., Attux, R. R. de F., & Rodrigues, L. H. A. (2025). Leveraging data from plant monitoring into crop models. Information Processing in Agriculture. https://doi.org/10.1016/j.inpa.2025.02.003 doi: 10.1016/j.inpa.2025.02.003 https://doi.org/10.1016/j.inpa.2025.02.003 Oliveira, M. P. G. de ., Zorzeto-Cesar, T. Q., Attux, R. R. de F., & Rodrigues, L. H. A.. (2023). CAN ACCURACY ISSUES OF LOW-COST SENSOR MEASUREMENTS BE OVERCOME WITH DATA ASSIMILATION?. Engenharia Agrícola, 43(2), e20220170. doi: 10.1590/1809-4430-Eng.Agric.v43n2e20220170/2023 https://doi.org/10.1590/1809-4430-Eng.Agric.v43n2e20220170/2023 Oliveira, M.P.G. de, Zorzeto-Cesar, T.Q., Nóia Júnior, R. de S., Wallach, D., Asseng, S., Rodrigues, L.H.A., 2024. Uncertainty in greenhouse tomato growth models. Comput. Electron. Agric. 225, 109324. https://doi.org/10.1016/j.compag.2024.109324 doi: 10.1016/j.compag.2024.109324 https://doi.org/10.1016/j.compag.2024.109324 OLIVEIRA, Monique Pires Gravina de; RODRIGUES, Luiz Henrique Antunes. Data assimilation in crop models: old experiences in new contexts. In: CONGRESSO BRASILEIRO DE AGROINFORMÁTICA (SBIAGRO), 14. , 2023, Natal/RN. Anais [...]. Porto Alegre: Sociedade Brasileira de Computação, 2023 . p. 40-47. ISSN 2177-9724. doi: 10.5753/sbiagro.2023.26539 https://sol.sbc.org.br/index.php/sbiagro/article/view/26539 OLIVEIRA, Monique Pires Gravina de; RODRIGUES, Luiz Henrique Antunes. Monitoramento de plantas em casas de vegetação para assimilação de dados. In: CONGRESSO BRASILEIRO DE AGROINFORMÁTICA (SBIAGRO), 13. , 2021, Evento Online. Anais [...]. Porto Alegre: Sociedade Brasileira de Computação, 2021 . p. 215-224. doi: 10.5753/sbiagro.2021.18393 https://sol.sbc.org.br/index.php/sbiagro/article/view/18393 Oliveira, M., Zorzeto-Cesar, T., Attux, R., & Rodrigues, L. H. (2023). Leveraging data from plant monitoring into crop models. In SciELO Preprints. https://doi.org/10.1590/SciELOPreprints.7663 doi: 10.1590/SciELOPreprints.7663 https://doi.org/10.1590/SciELOPreprints.7663 Oliveira, Monique and Zorzeto-Cesar, Thais Queiroz and Nóia Júnior, Rogério and Wallach, Daniel and Asseng, Senthold and Rodrigues, Luiz Henrique Antunes, Uncertainty in Greenhouse Tomato Models. 2024. Available at SSRN: https://ssrn.com/abstract=4768703 or http://dx.doi.org/10.2139/ssrn.4768703 doi: 10.2139/ssrn.4768703 http://dx.doi.org/10.2139/ssrn.4768703 Oliveira, M. P. G. de, Zorzeto-Cesar, T. Q., Attux, R. R. de F., & Rodrigues, L. H. A. (2024). Kalman Filters in crop models: old experiences in new contexts. In SciELO Preprints. https://doi.org/10.1590/SciELOPreprints.8033 doi: 10.1590/SciELOPreprints.8033 https://doi.org/10.1590/SciELOPreprints.8033
Production Location	Faculdade de Engenharia Agrícola, Universidade Estadual de Campinas (Feagri/Unicamp), Campinas - SP
Funding Information	Fundação de Amparo à Pesquisa do Estado de São Paulo: FAPESP: 18/12050-6
Depositor	Rodrigues, Luiz Henrique Antunes
Deposit Date	2021-10-13
Date of Collection	Start Date: 2019-07-11 ; End Date: 2019-10-28 Start Date: 2020-11-05 ; End Date: 2021-02-12 Start Date: 2021-03-10 ; End Date: 2021-06-11
Related Material	Project repository with scripts and related materials: https://zenodo.org/records/8419405
Declarações obrigatórias sobre ética e privacidade	o projeto que gerou os dados foi aprovado pelo Comite de Ética em Pesquisa da Unicamp ou não envolve questões que requeiram tal aprovação; os dados que serão depositados estão de acordo com a LGPD (Lei Geral de Proteção de Dados)

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